Say I have taken 5 prize cards during the game, but then my opponent uses Naganadel GX's "Stinger GX" attack to bring both players' prize count back to three prizes remaining. So if I then use Stakataka GX's "Assembly GX" attack on my next turn, how many prizes would I count when calculating the amount of damage to be done?
Even though the Stinger GX attack added cards back into your prizes, you have still taken five prizes during the game. So Assembly GX would do 50 damage plus 250 (five times 50) for the prize cards you have already taken.
Source: TPCi Rules Team (2018-08-09)

Relevant cards

Note: All applicable cards may not be listed below.
SM6_121
SM6_134
SM6_56
SMA_SV63
SMA_SV63
SM7_102
SM7_159
SM7_176
SMA_SV74
SMA_SV74