I attack my opponent's Burned and Asleep Pokemon with Drowzee's "Sinister Suggestion". When my opponent flips for Burned and Asleep, are those flips automatically tails?
No. Those flips are between turns, not during your opponent's turn as required by the attack.
Source:
Furious Fists FAQ (2014-08-28), TPCi Rules Team (2014-08-28)
If I use Hypno's "Hand Control" attack and I find a Supporter that searches my opponent's deck, do I have to let my opponent see the deck while I'm searching through it?
Technically speaking it is the opponent who searches through the deck, but since you are the one making the choice you are allowed to see the deck contents while they are searching.
Source:
Furious Fists FAQ (2014-08-28), TPCi Rules Team (2014-08-28)
If I use Hypno's "Hand Control" attack and I find a Supporter that searches my opponent's deck, can I choose to use it to search their deck, find a valid target in their deck, and fail that search?
Yes, you can have the opponent search their deck (within the game's time limits for a search) and you can choose for them to fail that search.
Source:
Furious Fists FAQ (2014-08-28), TPCi Rules Team (2014-08-28)
If I use Dusknoir's "Sinister Hand" Ability to KO my opponent's Active Pokemon, can I wait until my opponent replaces his or her Active Pokemon before taking my prize(s)?
No, per the rulebook you must take your prizes first, and then the opponent replaces his or her Active Pokemon.